• 资源导航
  •  ChIP-Seq
1. ERANGE
ERANGE is a Python package for doing RNA-seq and ChIP-seq.
标签：RNA-Seq Alignment, RNA-Seq Quantitation, ChIP-Seq,Allele-specific transcription
2. DESeq
DESeq is an R package to analyse count data from high-throughput sequencing assays such as RNA-Seq and test for differential expression. The latest version is DESeq2 (released April 2013).
标签：RNA-Seq Quantitation, ChIP-Seq
3. CLCbio Genomics Workbench
De novo and reference assembly SNP and small indel detection and annotation.
标签：Genomics, Whole Genome Resequencing, De-novo assembly, SNP discovery, InDel discovery, ChIP-Seq, RNA-Seq,MiRNA, Transcriptomics
4. SeqSolve
Simple analysis of Next Generation Sequencing data.
标签：RNA-Seq, ChIP-Seq,Transcriptomics, Small RNA transcriptome
5. NPS
Identify nucleosome positions given histone-modification ChIP-seq or nucleosome sequencing at the nucleosome level.
标签：Epigenomics, ChIP-Seq
6. Novocraft
Novoalign is a program for mapping short reads from the Illumina/SOLiD sequencing platform(s) to a reference genome. Package for aligning short reads to reference genomes
标签：Genomics, Whole Genome Resequencing, RNA-Seq Alignment, ChIP-Seq, MiRNA
7. Cistrome
Galaxy-based web service for analysis of ChIP data
标签：ChIP-on-chip, ChIP-Seq
8. MuMRescueLite
Probabilistically reincorporates multi-mapping tags into mapped short read data.
标签：Genomics, ChIP-Seq
9. GPS
GPS is a high spatial resolution peak detection algorithm for ChIP-Seq data.
标签：Genomics, ChIP-Seq,Transcription Factor Binding Site identification,Regulatory genomics epigenomics
10. NucleR
nucleR is a R/Bioconductor package for working with tiling arrays and next generation sequencing. It uses a novel aproach in this field which comprises a deep profile cleaning using Fourier Transform and peak scoring for a quick and flexible nucleosome calling
标签：ChIP-on-chip, ChIP-Seq,Nucleosome Positioning,Epigenomics
11. S-MART
S-MART manages your RNA-Seq and ChIP-Seq data.
标签：RNA-Seq, ChIP-Seq
12. GeneProf
GeneProf is a web-based, graphical software suite and database resource for high-throughput-sequencing experiments (RNA-seq and ChIP-seq).
标签：RNA-Seq, ChIP-Seq
13. GenomicTools
GenomicTools is a flexible computational platform for the analysis and manipulation of high-throughput sequencing data such as RNA-seq and ChIP-seq. A variety of mathematical operations between sets of genomic regions is implemented thereby enabling the prototyping of computational pipe...
标签：Genomics, ChIP-Seq, RNA-Seq
14. Partek Genomics Suite
Easy to use software providing A to Z analysis for all Next Generation Sequencing and Microarray data.
标签：Allele-specific transcription,RNA-Seq Quantitation,Epigenomics, Functional Genomics, ChIP-Seq,Alternative Splicing, SNP discovery, Small RNA transcriptome
15. SPP
R-scripts for ChIP-seq analysis.
标签：Genomics, ChIP-Seq
16. Genomatix Mining Station (GMS)
The Genomatix Mining Station (GMS) offers mapping of NGS reads onto genomes, transcriptomes and splice-junction libraries. It is a client-server based solution and can be controlled through an intuitive GUI or via command-line. It covers different tasks such as, as genomic positioning, ...
标签：RNA-Seq, SNP discovery, ChIP-Seq
17. DeepTools
User-friendly tools for the normalization and visualization of deep-sequencing data.
标签：Genomics, ChIP-Seq
18. ChIPmeta
Combining data from ChIP-seq and ChIP-chip.
标签：Transcription Factor Binding Site identification, ChIP-Seq,ChIP-on-chip
19. GenoMiner
A proprietary NGS analysis solution. Powerful hardware comes with preinstalled software, organized in workflows.
标签：Reference assembly, De-novo assembly, ChIP-Seq, RNA-Seq
20. MochiView
Hybrid genome browser and motif visualization/analysis/management desktop software.
标签：Genomics, ChIP-Seq, ChIP-on-chip, RNA-Seq, Motif analysis
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